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gfp-depdc5 (#46380)  (Addgene inc)


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    Structured Review

    Addgene inc gfp-depdc5 (#46380)
    Gfp Depdc5 (#46380), supplied by Addgene inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/gfp-depdc5 (#46380)/product/Addgene inc
    Average 90 stars, based on 1 article reviews
    gfp-depdc5 (#46380) - by Bioz Stars, 2026-03
    90/100 stars

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    (A) Fasting protocol for 24 h of 6- to 8-week-old mice randomized to either fast or fed condition. Studies were performed at the same time of day. Separate cohorts were either euthanized for blood and brain collection or administered the chemoconvulsant pentylenetetrazol (PTZ) to induce seizures. (B) Compared with fed mice, those fasted for 24 h had a reduction in seizures after PTZ challenge (65 mg/kg intraperitoneal injection) (n = 25 fed [14 M, 11 F]; 27 fasted mice [14 M, 13 F]; *p = 0.0126, log rank test). (C) Immunoblots from cortical brain lysates and (D) relative quantifications demonstrate a reduction in pSer240/244 S6 and pSer473 AKT after 24-h fasting. Individual symbols represent each independent animal tested with mean ± SD. **p < 0.01, ****p < 0.0001, Student’s t test. (E) After PTZ (65 mg/kg intraperitoneal injection), there was no difference between seizure susceptibility between fed or fasted <t>Depdc5</t> cc+ mice, which were significantly increased compared with littermate control mice (log rank test, *p < 0.05, **p < 0.01). Six- to 8-week-old mice randomized to either fast or fed condition; n = 20 control fed (8 M, 10 F), 19 control fasted (7 M, 12 F), 19 Depdc5 cc+ fed (8 M, 10 F), and 120 Depdc5 cc+ fasted (9 M, 11 F) littermate mice. (F) Immunoblots and (G) relative quantifications from cortical brain lysates demonstrate a reduction in pSer240/244 S6 after 24-h fasting in only controls; hyperactive mTORC1 in Depdc5 cc+ mouse brains was unchanged by fasting. Individual symbols indicate individual animals for the above measurements, mean ± SD with *p < 0.05, **p < 0.01, ****p < 0.0001. Two-way ANOVA with Tukey’s post hoc analysis.
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    Addgene inc gfp-depdc5 (#46380)
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    (A) Fasting protocol for 24 h of 6- to 8-week-old mice randomized to either fast or fed condition. Studies were performed at the same time of day. Separate cohorts were either euthanized for blood and brain collection or administered the chemoconvulsant pentylenetetrazol (PTZ) to induce seizures. (B) Compared with fed mice, those fasted for 24 h had a reduction in seizures after PTZ challenge (65 mg/kg intraperitoneal injection) (n = 25 fed [14 M, 11 F]; 27 fasted mice [14 M, 13 F]; *p = 0.0126, log rank test). (C) Immunoblots from cortical brain lysates and (D) relative quantifications demonstrate a reduction in pSer240/244 S6 and pSer473 AKT after 24-h fasting. Individual symbols represent each independent animal tested with mean ± SD. **p < 0.01, ****p < 0.0001, Student’s t test. (E) After PTZ (65 mg/kg intraperitoneal injection), there was no difference between seizure susceptibility between fed or fasted Depdc5 cc+ mice, which were significantly increased compared with littermate control mice (log rank test, *p < 0.05, **p < 0.01). Six- to 8-week-old mice randomized to either fast or fed condition; n = 20 control fed (8 M, 10 F), 19 control fasted (7 M, 12 F), 19 Depdc5 cc+ fed (8 M, 10 F), and 120 Depdc5 cc+ fasted (9 M, 11 F) littermate mice. (F) Immunoblots and (G) relative quantifications from cortical brain lysates demonstrate a reduction in pSer240/244 S6 after 24-h fasting in only controls; hyperactive mTORC1 in Depdc5 cc+ mouse brains was unchanged by fasting. Individual symbols indicate individual animals for the above measurements, mean ± SD with *p < 0.05, **p < 0.01, ****p < 0.0001. Two-way ANOVA with Tukey’s post hoc analysis.

    Journal: Cell reports

    Article Title: DEPDC5-dependent mTORC1 signaling mechanisms are critical for the anti-seizure effects of acute fasting

    doi: 10.1016/j.celrep.2022.111278

    Figure Lengend Snippet: (A) Fasting protocol for 24 h of 6- to 8-week-old mice randomized to either fast or fed condition. Studies were performed at the same time of day. Separate cohorts were either euthanized for blood and brain collection or administered the chemoconvulsant pentylenetetrazol (PTZ) to induce seizures. (B) Compared with fed mice, those fasted for 24 h had a reduction in seizures after PTZ challenge (65 mg/kg intraperitoneal injection) (n = 25 fed [14 M, 11 F]; 27 fasted mice [14 M, 13 F]; *p = 0.0126, log rank test). (C) Immunoblots from cortical brain lysates and (D) relative quantifications demonstrate a reduction in pSer240/244 S6 and pSer473 AKT after 24-h fasting. Individual symbols represent each independent animal tested with mean ± SD. **p < 0.01, ****p < 0.0001, Student’s t test. (E) After PTZ (65 mg/kg intraperitoneal injection), there was no difference between seizure susceptibility between fed or fasted Depdc5 cc+ mice, which were significantly increased compared with littermate control mice (log rank test, *p < 0.05, **p < 0.01). Six- to 8-week-old mice randomized to either fast or fed condition; n = 20 control fed (8 M, 10 F), 19 control fasted (7 M, 12 F), 19 Depdc5 cc+ fed (8 M, 10 F), and 120 Depdc5 cc+ fasted (9 M, 11 F) littermate mice. (F) Immunoblots and (G) relative quantifications from cortical brain lysates demonstrate a reduction in pSer240/244 S6 after 24-h fasting in only controls; hyperactive mTORC1 in Depdc5 cc+ mouse brains was unchanged by fasting. Individual symbols indicate individual animals for the above measurements, mean ± SD with *p < 0.05, **p < 0.01, ****p < 0.0001. Two-way ANOVA with Tukey’s post hoc analysis.

    Article Snippet: Depdc5-sh-GFP , Origene , TL508165.

    Techniques: Injection, Western Blot

    (A) Immunoblots from scramble control (CTL) and DEPDC5 knockdown (KD) primary cortical neurons after 90-min amino acid (AA) and/or growth factor (GF) withdrawal. (B) Reduced mTORC1 sensitivity of DEPDC5 KD neurons to AA withdrawal as measured by the ratio of quantified pS6 from AA withdrawal versus AA replete conditions from (A). (C) Immunoblots demonstrate that mTORC1 (pS240/244-S6), but not mTORC2 (pS473-AKT), is insensitive to withdrawal of leucine (L), arginine (R), and/or glutamine (Q) in DEPDC5 KD primary cortical neurons. (D) Representative images of mTOR lysosomal localization in primary neurons transduced with scramble or shDepdc5 lentivirus stained with mTOR (red) and the lysosomal marker LAMP1 (gray) after incubation with or without AA and/or GF for 90 min. Scale bars = 20 μm, 2× inset. (E) mTOR colocalization with LAMP1 after 90-min AA or leucine withdrawal is reduced by all AA withdrawal but insensitive to leucine alone withdrawal in DEPDC5 KD neurons by Mander’s colocalization index from at least 50 cells quantified across three independent experiments. (F) Immunoblots from scramble control (CTL) and TSC2 knockdown (KD) primary cortical neurons after 90-min amino acid (AA) and/or growth factor (GF) withdrawal. (G) Ratio of quantified pS6 from GF withdrawal versus GF replete conditions in (F) demonstrates that TSC2 KD neurons are insensitive to GF withdrawal independent of AAs. (H) Representative images of mTOR lysosomal localization in primary neurons transduced with scramble or TSC2 knockdown lentivirus stained with mTOR (red) and the lysosomal marker LAMP1 (gray) after incubation with or without AA and/or GF for 90 min. Scale bars, 20 μm, 2× inset. (I) mTOR colocalization with LAMP1 is reduced by 90-min AA or leucine withdrawal in both TSC2 KD and control neurons by Mander’s colocalization index from at least 50 cells quantified across three independent experiments. (J) Immunoblots from scramble control (CTL) and double-knockdown of DEPDC5 and TSC2 (DTKD) primary cortical neurons after 90-min AA and/or GF withdrawal. For all experiments, graphs of mean ± SD, with symbols representing individual replicates from at least three independent experiments, two-way ANOVA with Tukey’s post hoc analysis. *p < 0.05, **p < 0.01, ****p < 0.001, ****p < 0.0001.

    Journal: Cell reports

    Article Title: DEPDC5-dependent mTORC1 signaling mechanisms are critical for the anti-seizure effects of acute fasting

    doi: 10.1016/j.celrep.2022.111278

    Figure Lengend Snippet: (A) Immunoblots from scramble control (CTL) and DEPDC5 knockdown (KD) primary cortical neurons after 90-min amino acid (AA) and/or growth factor (GF) withdrawal. (B) Reduced mTORC1 sensitivity of DEPDC5 KD neurons to AA withdrawal as measured by the ratio of quantified pS6 from AA withdrawal versus AA replete conditions from (A). (C) Immunoblots demonstrate that mTORC1 (pS240/244-S6), but not mTORC2 (pS473-AKT), is insensitive to withdrawal of leucine (L), arginine (R), and/or glutamine (Q) in DEPDC5 KD primary cortical neurons. (D) Representative images of mTOR lysosomal localization in primary neurons transduced with scramble or shDepdc5 lentivirus stained with mTOR (red) and the lysosomal marker LAMP1 (gray) after incubation with or without AA and/or GF for 90 min. Scale bars = 20 μm, 2× inset. (E) mTOR colocalization with LAMP1 after 90-min AA or leucine withdrawal is reduced by all AA withdrawal but insensitive to leucine alone withdrawal in DEPDC5 KD neurons by Mander’s colocalization index from at least 50 cells quantified across three independent experiments. (F) Immunoblots from scramble control (CTL) and TSC2 knockdown (KD) primary cortical neurons after 90-min amino acid (AA) and/or growth factor (GF) withdrawal. (G) Ratio of quantified pS6 from GF withdrawal versus GF replete conditions in (F) demonstrates that TSC2 KD neurons are insensitive to GF withdrawal independent of AAs. (H) Representative images of mTOR lysosomal localization in primary neurons transduced with scramble or TSC2 knockdown lentivirus stained with mTOR (red) and the lysosomal marker LAMP1 (gray) after incubation with or without AA and/or GF for 90 min. Scale bars, 20 μm, 2× inset. (I) mTOR colocalization with LAMP1 is reduced by 90-min AA or leucine withdrawal in both TSC2 KD and control neurons by Mander’s colocalization index from at least 50 cells quantified across three independent experiments. (J) Immunoblots from scramble control (CTL) and double-knockdown of DEPDC5 and TSC2 (DTKD) primary cortical neurons after 90-min AA and/or GF withdrawal. For all experiments, graphs of mean ± SD, with symbols representing individual replicates from at least three independent experiments, two-way ANOVA with Tukey’s post hoc analysis. *p < 0.05, **p < 0.01, ****p < 0.001, ****p < 0.0001.

    Article Snippet: Depdc5-sh-GFP , Origene , TL508165.

    Techniques: Western Blot, Transduction, Staining, Marker, Incubation

    (A) Top 20 metabolites from metabolomic analysis of cortical lysates from Depdc5 cc+ and control mice either fed or fasted. (B–F) Brain 3-hydroxybutyrate values from metabolomic analysis were significantly increased in fasted mice compared with fed mice. Metabolomic analysis, normalized peak intensity values were baseline corrected to the average of the control fed mice. Metabolomic analysis of individual amino acid levels in the brain demonstrated the following: (C) glutamine decreased by fasting in both genotypes but consistently lower in Depdc5 cc+ brains compared with controls, (D) arginine decreased in fasting state in both genotypes and only significantly lower in Depdc5 cc+ brains compared with controls, (E) leucine increased after fasting but less in Depdc5 cc+ brains compared with controls, and (F) tryptophan was unchanged by fasting but decreased in Depdc5 cc+ brains compared with controls. (G) Serotonin levels correlated with tryptophan levels as they were also decreased in Depdc5 cc+ brains compared with controls. Individual symbols indicate individual animals for the above measurements with *p < 0.05, **p < 0.01, ****p < 0.0001, two-way ANOVA with Tukey’s post hoc analysis. (H) PTZ-seizure-induced death was increased in Depdc5 cc+ mice and not changed by fasting, n > 16 mice per group (log rank test, **p < 0.01 in both fed and fasted Depdc5 cc+ mice groups compared individually with fed and fasted littermate controls).

    Journal: Cell reports

    Article Title: DEPDC5-dependent mTORC1 signaling mechanisms are critical for the anti-seizure effects of acute fasting

    doi: 10.1016/j.celrep.2022.111278

    Figure Lengend Snippet: (A) Top 20 metabolites from metabolomic analysis of cortical lysates from Depdc5 cc+ and control mice either fed or fasted. (B–F) Brain 3-hydroxybutyrate values from metabolomic analysis were significantly increased in fasted mice compared with fed mice. Metabolomic analysis, normalized peak intensity values were baseline corrected to the average of the control fed mice. Metabolomic analysis of individual amino acid levels in the brain demonstrated the following: (C) glutamine decreased by fasting in both genotypes but consistently lower in Depdc5 cc+ brains compared with controls, (D) arginine decreased in fasting state in both genotypes and only significantly lower in Depdc5 cc+ brains compared with controls, (E) leucine increased after fasting but less in Depdc5 cc+ brains compared with controls, and (F) tryptophan was unchanged by fasting but decreased in Depdc5 cc+ brains compared with controls. (G) Serotonin levels correlated with tryptophan levels as they were also decreased in Depdc5 cc+ brains compared with controls. Individual symbols indicate individual animals for the above measurements with *p < 0.05, **p < 0.01, ****p < 0.0001, two-way ANOVA with Tukey’s post hoc analysis. (H) PTZ-seizure-induced death was increased in Depdc5 cc+ mice and not changed by fasting, n > 16 mice per group (log rank test, **p < 0.01 in both fed and fasted Depdc5 cc+ mice groups compared individually with fed and fasted littermate controls).

    Article Snippet: Depdc5-sh-GFP , Origene , TL508165.

    Techniques:

    KEY RESOURCES TABLE

    Journal: Cell reports

    Article Title: DEPDC5-dependent mTORC1 signaling mechanisms are critical for the anti-seizure effects of acute fasting

    doi: 10.1016/j.celrep.2022.111278

    Figure Lengend Snippet: KEY RESOURCES TABLE

    Article Snippet: Depdc5-sh-GFP , Origene , TL508165.

    Techniques: Recombinant, Generated, Software

    KEY RESOURCES TABLE

    Journal: Cell reports

    Article Title: DEPDC5-dependent mTORC1 signaling mechanisms are critical for the anti-seizure effects of acute fasting

    doi: 10.1016/j.celrep.2022.111278

    Figure Lengend Snippet: KEY RESOURCES TABLE

    Article Snippet: Depdc5-sh-GFP , Origene , TL508165.

    Techniques: Virus, Control, Recombinant, Generated, Software